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Kevin
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Message 30 - Posted: 23 Jul 2012, 17:45:22 UTC
Last modified: 23 Jul 2012, 22:33:21 UTC

Hi everyone,
We have a few updates:

1. We have regenerated our signing keys but due to a technical problem they will not be distributed automatically. Please detach and reattach to the project in order to receive new workunits. We apologise for the inconvenience and will ensure that it does not happen again.

2. We are having issues with a small percentage (less than 1%) of Windows computers and a very small percentage of Linux computers. We are working to release new app versions in order to address these problems.

3. We have limited the number of tasks in progress per computer to 20 per CPU core. Although this has not been an issue for some, we have had a large number of aborted tasks as a result of sending too much work to each node.

Thanks for your your help.
Kevin

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Message 31 - Posted: 23 Jul 2012, 18:52:13 UTC - in response to Message 30.

Hi everyone,
We have a few updates:
Thanks for your help.
Kevin


well, thanks!

and thanks - no!

unless you get rid of creditnew which is defintely not a suitable setup for your type of WU-mix, i'm out.

greets, frank.

Kevin
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Message 32 - Posted: 23 Jul 2012, 19:28:51 UTC

We intend to do this very soon.
Regards,
Kevin

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Message 33 - Posted: 23 Jul 2012, 20:37:12 UTC

With a run time of under 8 minutes, 20 work units per core isn't even 3 hours worth of work....At least give us half a days worth of work......

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Message 34 - Posted: 23 Jul 2012, 20:56:01 UTC - in response to Message 33.
Last modified: 23 Jul 2012, 20:57:24 UTC

With a run time of under 8 minutes, 20 work units per core isn't even 3 hours worth of work...

Those sound like the v1.07 app. The v2.00 tasks are running a lot longer on my hosts.
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Message 35 - Posted: 23 Jul 2012, 23:15:54 UTC - in response to Message 34.

The v2.00 tasks are running a lot longer on my hosts.

Well, of course, not all of them are long... (e.g., 151161)
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Message 36 - Posted: 24 Jul 2012, 4:30:43 UTC

Yes, I am getting from 500 seconds to over 8,000 second work units. The longest ones are on my 32 bit Windows machines, so far not as long on the Linux computers.

Conan

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Message 38 - Posted: 24 Jul 2012, 12:01:44 UTC - in response to Message 30.

We are having issues with a small percentage (less than 1%) of Windows computers


Yes, I still have the same problem that I had with V1.07 ...

http://boinc.ucd.ie/fmah/result.php?resultid=163738

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
- exit code -148 (0xffffff6c)
</message>
<stderr_txt>
wrapper: starting
12:04:29 (3000): wrapper: running ../../projects/boinc.ucd.ie_fmah/vina_2.0_windows_intelx86.exe (--config conf --receptor receptor.pdb --ligand ligand.pdb --out outfile --exhaustiveness 20 --cpu 1)
can't run app: This application has failed to start because the application configuration is incorrect. Reinstalling the application may fix this problem. (0x36b1)
12:04:29 (3000): called boinc_finish

</stderr_txt>
]]>


I grabbed a section of the messages tab - There's loads of this:

24/07/2012 12:03:36|fightmalaria@home|Starting vina_6230_1343063354.179880-38-1ZRO_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0
24/07/2012 12:03:36|fightmalaria@home|Starting task vina_6230_1343063354.179880-38-1ZRO_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 using vina version 200
24/07/2012 12:03:36|fightmalaria@home|Starting vina_6230_1343063340.234497-74-1Z6B_A.pdbqt-121-1ONF_lig_2.pdbqt-A1-_0
24/07/2012 12:03:36|fightmalaria@home|Starting task vina_6230_1343063340.234497-74-1Z6B_A.pdbqt-121-1ONF_lig_2.pdbqt-A1-_0 using vina version 200
24/07/2012 12:03:44|fightmalaria@home|[error] Can't rename output file vina_6230_1343063354.179880-38-1ZRO_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0
24/07/2012 12:03:49|fightmalaria@home|[error] Can't rename output file vina_6230_1343063340.234497-74-1Z6B_A.pdbqt-121-1ONF_lig_2.pdbqt-A1-_0_0
24/07/2012 12:03:49|fightmalaria@home|Computation for task vina_6230_1343063354.179880-38-1ZRO_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 finished
24/07/2012 12:03:49|fightmalaria@home|Output file vina_6230_1343063354.179880-38-1ZRO_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0 for task vina_6230_1343063354.179880-38-1ZRO_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 absent
24/07/2012 12:03:49|fightmalaria@home|Computation for task vina_6230_1343063340.234497-74-1Z6B_A.pdbqt-121-1ONF_lig_2.pdbqt-A1-_0 finished
24/07/2012 12:03:49|fightmalaria@home|Output file vina_6230_1343063340.234497-74-1Z6B_A.pdbqt-121-1ONF_lig_2.pdbqt-A1-_0_0 for task vina_6230_1343063340.234497-74-1Z6B_A.pdbqt-121-1ONF_lig_2.pdbqt-A1-_0 absent
24/07/2012 12:03:49|fightmalaria@home|Starting vina_6230_1343063350.564181-11-1D5C_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0
24/07/2012 12:03:49|fightmalaria@home|Starting task vina_6230_1343063350.564181-11-1D5C_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 using vina version 200
24/07/2012 12:03:49|fightmalaria@home|Starting vina_6230_1343063350.070149-9-2QU8_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0
24/07/2012 12:03:49|fightmalaria@home|Starting task vina_6230_1343063350.070149-9-2QU8_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 using vina version 200
24/07/2012 12:03:57|fightmalaria@home|[error] Can't rename output file vina_6230_1343063350.564181-11-1D5C_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0
24/07/2012 12:04:02|fightmalaria@home|[error] Can't rename output file vina_6230_1343063350.070149-9-2QU8_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0
24/07/2012 12:04:02|fightmalaria@home|Computation for task vina_6230_1343063350.564181-11-1D5C_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 finished
24/07/2012 12:04:02|fightmalaria@home|Output file vina_6230_1343063350.564181-11-1D5C_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0 for task vina_6230_1343063350.564181-11-1D5C_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 absent
24/07/2012 12:04:02|fightmalaria@home|Computation for task vina_6230_1343063350.070149-9-2QU8_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 finished
24/07/2012 12:04:02|fightmalaria@home|Output file vina_6230_1343063350.070149-9-2QU8_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0 for task vina_6230_1343063350.070149-9-2QU8_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 absent
24/07/2012 12:04:02|fightmalaria@home|Starting vina_6230_1343063351.182768-14-1OB3_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0
24/07/2012 12:04:02|fightmalaria@home|Starting task vina_6230_1343063351.182768-14-1OB3_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 using vina version 200
24/07/2012 12:04:02|fightmalaria@home|Starting vina_6230_1343063351.283264-15-1NHG_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0
24/07/2012 12:04:03|fightmalaria@home|Starting task vina_6230_1343063351.283264-15-1NHG_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 using vina version 200
24/07/2012 12:04:11|fightmalaria@home|[error] Can't rename output file vina_6230_1343063351.182768-14-1OB3_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0
24/07/2012 12:04:17|fightmalaria@home|[error] Can't rename output file vina_6230_1343063351.283264-15-1NHG_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0
24/07/2012 12:04:17|fightmalaria@home|Computation for task vina_6230_1343063351.182768-14-1OB3_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 finished
24/07/2012 12:04:17|fightmalaria@home|Output file vina_6230_1343063351.182768-14-1OB3_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0 for task vina_6230_1343063351.182768-14-1OB3_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 absent
24/07/2012 12:04:17|fightmalaria@home|Computation for task vina_6230_1343063351.283264-15-1NHG_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 finished
24/07/2012 12:04:17|fightmalaria@home|Output file vina_6230_1343063351.283264-15-1NHG_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0 for task vina_6230_1343063351.283264-15-1NHG_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 absent

So far only one machine affected (same as one of the 2 before), but I suspect the other one will also fail in the same way. Working OK on my other machines though.

Cheers,

Al.

Kevin
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Message 42 - Posted: 24 Jul 2012, 20:18:26 UTC

Thanks for that. We will be working to fix these issues over the next few days.
Cheers,
Kevin

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Message 44 - Posted: 24 Jul 2012, 22:12:46 UTC

I was just able to download a few WUs and got through them in about 3 minutes each. Will all of them be like that?

Conan
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Message 45 - Posted: 25 Jul 2012, 1:33:57 UTC - in response to Message 44.

I was just able to download a few WUs and got through them in about 3 minutes each. Will all of them be like that?


Short answer is 'No'.
The tasks have varying run times and some will run up to maybe an hour or more. Most are much shorter.

Conan

Ant Chubb
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Message 46 - Posted: 25 Jul 2012, 10:10:14 UTC - in response to Message 44.
Last modified: 25 Jul 2012, 11:06:48 UTC

The run time varies depending on the number of rotatable bonds in the ligand, and the size of the receptor. Large ligands into a large receptor will take significantly more time than a small ligand into a small receptor. The average is about 10 minutes per run.
ciao
Ant

ChertseyAl
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Message 48 - Posted: 25 Jul 2012, 12:05:20 UTC - in response to Message 44.

I was just able to download a few WUs and got through them in about 3 minutes each. Will all of them be like that?


FWIW, I've seen a range of times from a few minutes to 5 hours :)

Cheers,

Al.

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